PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g031970.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARF
Protein Properties Length: 845aa    MW: 94446.1 Da    PI: 6.2332
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g031970.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.5e-23127228199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae+       ++ +++ ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  Sopim03g031970.0.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSQTPPC-QELIARDLHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 214
                         99*****************************7555555.59************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++ +l+++++r+
  Sopim03g031970.0.1 215 WNEKNQLFLGIRRA 228
                         8889999****997 PP

2Auxin_resp114.87.5e-38253336183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaast+s F v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrW nS+Wrs+k
  Sopim03g031970.0.1 253 AAHAASTNSCFIVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWANSHWRSVK 336
                         79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-49111256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-40120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-21126222No hitNo description
PfamPF023622.4E-21127228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.984127229IPR003340B3 DNA binding domain
SMARTSM010192.8E-23127229IPR003340B3 DNA binding domain
PfamPF065075.8E-33253336IPR010525Auxin response factor
PfamPF023099.4E-7710803IPR033389AUX/IAA domain
PROSITE profilePS5174523.055717801IPR000270PB1 domain
SuperFamilySSF542779.16E-7720791No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MKLSTSGMGQ QAHEGENKCL NSELWHACAG PLVCLPTVGS RVVYFPQGHS EQVAATTNKE  60
VDIHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTLQEQKDT YLPVELGIPS  120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ TPPCQELIAR DLHDIEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LFLGIRRATR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAASTN SCFIVFFNPR ASPSEFVIPL SKYIKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDPVRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSLFP LRLKRPWYPG TSSFQENNSE AINGMTWLRG ESSEQGPHLL NLQSFGGMFP  420
WMQQRVDPTM LRNDLNQQYQ AMLASGLQNF GSGDLMKQQL MQFPQPVQYV QHAGSVNPQL  480
QQQQQQQETM QQTIHHHMLP AQTQDNLQRQ QQQHVSNQTE EQSHQHSYQD AYQIPNSQLQ  540
QKQPSNVPSP SFSKPDIADP SSKFSASIAP SGMPTALGSL CSEGTTNFLN FNIIGQQPVI  600
MEQQQQQKSW MAKFANSQLN MGSSSPSLSG YGKETSNSQE TCSLDAQNQS LFGANVDSSG  660
LLLPTTVSNV ATTSIDADIS SMPLGTSGFP NPLYSYVQDS TDLLHNVGQA DAQTVPRTFV  720
KVYKSASLGR SLDITRFNSY HELRQELGQM FGIEGFLENP QRSGWQLVFV DRENDVLLLG  780
DDPWEEFVNN VWYIKILSPE DVQKLGKEEV GSLNRGPPER MSSNNSADGR DFMSGLPSIG  840
SLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1592035751388Auxin response factor 5
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5609790.0HM560979.1 Solanum lycopersicum auxin response factor 8-1 (ARF8-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234552.10.0auxin response factor 8-1
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLK4BFG80.0K4BFG8_SOLLC; Auxin response factor
STRINGSolyc03g031970.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38572339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8